Scaffold Ga0114973_10047575

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10047575
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2539
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011142	Metagenome / Metatranscriptome	294	Y
F059759	Metagenome / Metatranscriptome	133	Y
F077016	Metagenome	117	Y
F102815	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1004757510	F077016	GAGG	MANTAENVREFYRRQGEKRERSRLINLLLEQNVIRHCAATDLLVFVNCNTLEVLYLKDDLMNESAK*
Ga0114973_100475752	F011142	GAG	MAQVKVTGKVNKVFGASSQGLSLVESYKSATGEDYTRTWTVWFAVAHNLAVDSEVTVTGQLSAKIEDFEDKTGKPGRKVKLDVNNAVIASTPKIEELPF*
Ga0114973_100475756	F059759	AGCAGG	MNKQQIWDLLEIYRQMQVANTLTQYGDAFQELHVFIEENCLKEGN*
Ga0114973_100475757	F102815	AGGA	MNTEELFLQAINAYKAWINTGKDFVNHANLYDVWDDAVMAYAQAVHLQRNRAVHQILQGLELIK*