Scaffold Ga0114973_10040112

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10040112
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2797
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027512	Metagenome	194	Y
F029657	Metagenome	187	N
F029746	Metagenome	187	N
F091345	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100401122	F029657	AGG	MSEYNIKEIKMKTTCKPCITIRTFFFLLRKNYQQFRKELKDYSYINQISCEMPKYKAPKTIDEGMAELKRVRETAKKLYDKEKEEELLKSVVQ*
Ga0114973_100401124	F027512	N/A	MNEQIEEFLKMYGDRLPNPEHCPKEFEYYIRLYKYIKGLE*
Ga0114973_100401126	F091345	AGGA	MKTMQQQETEAILSMVELIKTLEQQLSNAKDRIKELEDNQKESEYVQLKSHYE*
Ga0114973_100401128	F029746	AGGAG	LNKNFWGPADDEESLPEWMDPKTYSNPKPKRSGPSLMESIQEAMRKPPVPIIIQEPKND*