Scaffold Ga0114973_10029727

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10029727
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3315
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F011077	Metagenome / Metatranscriptome	295	Y
F017788	Metagenome / Metatranscriptome	238	Y
F020851	Metagenome / Metatranscriptome	221	Y
F037701	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1002972711	F004475	GAGG	MTNWTEELNDKQKEEVWNFVVFTVKEIREQIAKDIEATIPLWKSKGFLKSRRTQKAFEASAAIARGENEQI*
Ga0114973_100297272	F011077	GAG	MMTDNLTWAEEDVNLWKGWTYSPKKNRYYFNDIGDESLAAFWADEFLNQAYS*
Ga0114973_100297274	F037701	AGGA	MIRSKEWRVNTRFWVSTGFNPRRIALGFSVDRFNANIDFLWFWVTLEY*
Ga0114973_100297275	F020851	N/A	MSEDIVDLAISMAEIDTGMQVPLEEREAMKQRILARIKEINE*
Ga0114973_100297277	F017788	AGGA	MKKIIITSLLITLLMPIASAEAATKSLNTKGNKASCKNIKTKYQSEVMSKWSNGLASDQDVLKEIDLNIDMLTTKQKTTTGKIKTTLASWIKAEKDTKSALEDKDLKGITVAMNLKISSITNFDKLCKGIEK*