Scaffold Ga0114973_10020366

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10020366
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4128
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011394	Metagenome / Metatranscriptome	291	Y
F014140	Metagenome / Metatranscriptome	265	Y
F066776	Metagenome / Metatranscriptome	126	Y
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100203661	F014140	N/A	MNKYRIKLDIEVEVEAFNTEDASEYIHDIFNIDDEIKKINVVKISPINH*
Ga0114973_100203664	F066776	AGG	LLHLTEKGVEIFIKRSQTKSQESFWNNYDLVIWQKDNGGYTSTNGMYRQNAWGKSEKFSVNREGNWKLPKKYVKYFK*
Ga0114973_100203666	F011394	AGGA	MFIDKNKDHFKYGVNEWTGEPNRPVFYTKEMAKKVRELKSPAPNLEMDIVKYPEFLAIRLYENNFAQYDGSMRVRVIEYIEMVKNILQSYGVRVELEGKPGGKNNG*
Ga0114973_100203667	F072349	AGGGGG	MDKVLCYSCNKSKNELTAKKSTLLAINLLLCKTCTENKFEPRWIVILAGRQYGADHVKEFIAKKKYIGVDITASELLI*
Ga0114973_100203668	F105192	N/A	MNIPLTEILITLFAAAISGLLTAQIGAIRSKKERAERQSEKAHDQLLLEIKDLQIKLYKLEKDLTEWKDKYFEAIQELIKVKSELEGTMLRLTHIEMHEDHLDDL*