Scaffold Ga0114973_10011456

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10011456
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5713
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F013279	Metagenome / Metatranscriptome	272	Y
F018135	Metagenome	236	Y
F020167	Metagenome	225	Y
F037113	Metagenome / Metatranscriptome	168	Y
F038999	Metagenome	164	Y
F075748	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1001145611	F003212	AGGAG	MKDRYLVTLEIETYDGDPREWDWEKLSTGEDVIKIIESHWKGRVLPTSEGESNE*
Ga0114973_1001145614	F037113	GGAGG	MSKWTVWVGAYEVNWQHYAYKIDADRVAEFYREVKGYDDVIVKEVA*
Ga0114973_1001145616	F003863	GGAGG	MESKQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWIISSDSKLTVTTHTRANAVPDVAGRTDYESSDESYNGGEA*
Ga0114973_1001145618	F013279	AGGCGG	MQYDYRCPDCNTVLTIERSIHENPREPSCFDCHVTMVRKWDSPAITFKGKGFYTNGG*
Ga0114973_100114563	F038999	GGAG	MTKELEQGTKLSFPCSCNGCRNYPTRPAEIWHESQIASKAQGYFFTKDTMRFFNSRIADFKPVGISPRGVDSLMVIVSNKRDNDPRYYEIVTLCPYGELGREWATDSEGEPITNYASLYKARKSARWNCTIAAQLCDCHGCQLDKAGR*
Ga0114973_100114565	F018135	AGG	MTIETLRHSGAYVMSALAGKGGGEYLFTRTYYGYTLKQAKAQFRIALEGEGK*
Ga0114973_100114567	F020167	GAGG	METINELVNEIYEDNYSHLELNDAMGGDCDCIVHNTLNTIVKYWHEREGE*
Ga0114973_100114569	F075748	GAGG	MNKQEILSIIDSTQSFNAFIEGIDTINGQSLGLVIDVAGVDGQDWTDEECLDTIKEIVDLTNAYKNTHDWSD*