Scaffold Ga0114973_10005957

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10005957
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8236
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002598	Metagenome / Metatranscriptome	544	Y
F007691	Metagenome / Metatranscriptome	346	Y
F009531	Metagenome / Metatranscriptome	316	Y
F020910	Metagenome / Metatranscriptome	221	Y
F021757	Metagenome	217	Y
F026557	Metagenome / Metatranscriptome	197	Y
F034575	Metagenome / Metatranscriptome	174	N
F035304	Metagenome / Metatranscriptome	172	Y
F040623	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100059572	F034575	GGAGG	VNNIELDPYLMKQVEMGMDGADILHGHLKTLMYEAEQVLDRCIEAEEYSEEAMDSMARTEATGYLDALSEVYALTYAIAFAKEDVKNRKEILGG*
Ga0114973_1000595721	F021757	AGGTGG	MMTRKDYVATAEILSSFKDLIGDEFTFHDLVDEFASMFEADNERFDSQKFFEACNKNNY*
Ga0114973_1000595723	F026557	AGG	MINSVLSIPCEECHSTGLIFWGNDLDYDVETCVCDFGMEQDLKLFNTPEAN*
Ga0114973_1000595724	F000447	AGGCGG	MGFIEFARIDNEGVEWVDLESATPAELLDLGIGLFQEGAI*
Ga0114973_1000595726	F002598	AGAAGG	MATKLFTIENLLVGKTYRSRSRHFEGEIVSATPRPEIWYGENTEAYLIGVYAKNKLSTQYATIAVKTK*
Ga0114973_100059573	F035304	N/A	MDLNTLKEYIRLHAISLEQDLENEDGADSIVPYLEGAIHVSRHYLEVAGE*
Ga0114973_100059574	F020910	AGAAGG	MWSKYTFVCDPDECDALLEFTARDGYGFPNGSVEMKCPCGRMMNYISYEDAWEPIITDVSKVTPVTVVKINTNPYN*
Ga0114973_100059576	F040623	GAGG	MKVRISLEQTIDIDDAMSNDIGFELYGPPDMSNEDKVDYLIARFAEDIDTMVKYDEVMGNISVEYIED*
Ga0114973_100059577	F007691	GAG	VNTIDELINEIYESNFSHLEFEENMGGDACDCHIHTTLNTIAHYAGIEVGE*
Ga0114973_100059579	F009531	N/A	MTQQVAIYEMNYSCSPGGVDCWEATIQGYGTSTTASDFKTAGEALNWVIDRHPDEVLELVVTSLPAYEKEYV*