NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114973_10002790

Scaffold Ga0114973_10002790


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10002790 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12541
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (80.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007519Metagenome / Metatranscriptome349Y
F010151Metagenome / Metatranscriptome307Y
F011292Metagenome / Metatranscriptome292Y
F019438Metagenome229Y
F042869Metagenome157Y
F046909Metagenome / Metatranscriptome150Y
F093280Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0114973_100027901F010151N/AKHTKVPTSPGACAIVVFGAIARIDKQSITPFMEYVERFDAEWQAVFAINIAKNRDKQAIAFSCQAFSNWVAKNQDLL*
Ga0114973_1000279010F019438GAGMMETIATTILLGGLGFIVCGLVLIGLMRLWFWMDENERGDR*
Ga0114973_1000279011F042869AGGGGGMNKLIRKEDTIKNWVPIGSLELKLAVAKAEGYAIRVDETRYHHVVDGTVVTSVDESKPKYYYYGPQQLLLSMFNPYRIAMEFYLKEKSK*
Ga0114973_1000279013F011292AGGAGMTPQSFDIDTCKEVVGDARMRTIEAKARQDADNGVVDAPKEAKGTYWDKAYSYMEYIVYITAHHKRLERIQRMKEKNT*
Ga0114973_1000279014F093280AGGAGMSPKIEALIKTSGCADVGELFDQTIRLGKVLHQFKQENGRPMDATEMKYLEAVVHATPQEKT*
Ga0114973_1000279018F046909GGAGMMPPPSKELCLMMAKINYPRDEKLSWTWLFAWGFHDAYVDGWYEGVKL*
Ga0114973_1000279019F007519AGGAGGMPTGIEELKLIKPKKGRGLGKKPPLFCTSLRLPKEVMDYFNTKYPYTKQAKMREILTEYINSQMQGANNGNS*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.