Basic Information | |
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Taxon OID | 3300009068 Open in IMG/M |
Scaffold ID | Ga0114973_10002790 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12541 |
Total Scaffold Genes | 30 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (80.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007519 | Metagenome / Metatranscriptome | 349 | Y |
F010151 | Metagenome / Metatranscriptome | 307 | Y |
F011292 | Metagenome / Metatranscriptome | 292 | Y |
F019438 | Metagenome | 229 | Y |
F042869 | Metagenome | 157 | Y |
F046909 | Metagenome / Metatranscriptome | 150 | Y |
F093280 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114973_100027901 | F010151 | N/A | KHTKVPTSPGACAIVVFGAIARIDKQSITPFMEYVERFDAEWQAVFAINIAKNRDKQAIAFSCQAFSNWVAKNQDLL* |
Ga0114973_1000279010 | F019438 | GAG | MMETIATTILLGGLGFIVCGLVLIGLMRLWFWMDENERGDR* |
Ga0114973_1000279011 | F042869 | AGGGGG | MNKLIRKEDTIKNWVPIGSLELKLAVAKAEGYAIRVDETRYHHVVDGTVVTSVDESKPKYYYYGPQQLLLSMFNPYRIAMEFYLKEKSK* |
Ga0114973_1000279013 | F011292 | AGGAG | MTPQSFDIDTCKEVVGDARMRTIEAKARQDADNGVVDAPKEAKGTYWDKAYSYMEYIVYITAHHKRLERIQRMKEKNT* |
Ga0114973_1000279014 | F093280 | AGGAG | MSPKIEALIKTSGCADVGELFDQTIRLGKVLHQFKQENGRPMDATEMKYLEAVVHATPQEKT* |
Ga0114973_1000279018 | F046909 | GGAG | MMPPPSKELCLMMAKINYPRDEKLSWTWLFAWGFHDAYVDGWYEGVKL* |
Ga0114973_1000279019 | F007519 | AGGAGG | MPTGIEELKLIKPKKGRGLGKKPPLFCTSLRLPKEVMDYFNTKYPYTKQAKMREILTEYINSQMQGANNGNS* |
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