Scaffold Ga0114973_10001585

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10001585
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16831
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (80.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020531	Metagenome	223	Y
F029091	Metagenome / Metatranscriptome	189	Y
F035280	Metagenome	172	Y
F042308	Metagenome / Metatranscriptome	158	Y
F049581	Metagenome	146	Y
F054812	Metagenome / Metatranscriptome	139	Y
F072277	Metagenome	121	Y
F092020	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000158516	F054812	GGAG	MNEQEVNEKFDNLVKPQVVKQKKEPAKFPELRYLWGITLIGSFALVILSAVITTIIEAL*
Ga0114973_1000158524	F029091	AGGAG	MAQKALKKIGQYRLYKVEGYGIYEIYYGTKESGVHVENISEKENFSWAVAEIKRSFQQAMREEFGIGVSN*
Ga0114973_1000158526	F042308	GGAGG	MGWDVTQVGSNITTYAFINYYIRRTYDGIYESVKIFEGKNENGQKAFYVALKKLEDNSVFACVILTQRKNGQVFSKVIGESEEPLYYEAPKSFIDVLTPASTYGGAWWRNRCLEKYLEKENA*
Ga0114973_100015853	F072277	N/A	VESERRTDMKCVKCGVAVGKMEVFQSGVCLKCYAEEFEKEFQSALKIARLK*
Ga0114973_1000158530	F035280	GAGG	MEKKIGKYWFNWGRTSGFALGFNISKYNWGIELGFWYVGMEF*
Ga0114973_1000158539	F020531	N/A	MNLSDIAVLVGFIGIYDLRIQVDELKVRAWAESLDRDLTLEEAKTIVSWHYANFDTAITPSHINKELRRRMADSREQEKSRLMSLEWEQREKEKASPEVIAKWKKEFLDYMNRNRVEDAPLENDSDTVAPNP*
Ga0114973_1000158540	F092020	N/A	YHPSYTSVLSTTKSDETAIAVIPLSEAVARKWWEKQRVKPLGKSAWHSLLAICQAADKRGYTSEQIEQALDYIGTVPSMRQMDLVLRGVGVKTKHEQSAIRAIDLAEKFRNESI*
Ga0114973_100015858	F049581	GGAG	MTKQEGRPFNEDELIDQIGRMNIFAVSGGRVNITKNNQGETVEVELPVGYGYRVSIKLDWNDTYIVSRQFVRKGVVTDKGTVDGIYCEEIGEVVYQASCFRNVEFGKAVA*