Scaffold Ga0114973_10001461

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10001461
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17669
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (65.12%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006255	Metagenome	377	Y
F012854	Metagenome / Metatranscriptome	276	Y
F014955	Metagenome	258	Y
F016143	Metagenome	249	Y
F017107	Metagenome	242	Y
F017287	Metagenome	241	Y
F027399	Metagenome	194	Y
F029048	Metagenome / Metatranscriptome	189	Y
F046243	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100014611	F012854	N/A	ALIKLYPQIVTLTGDVATDANGNEVAYDLAAVTTQAQADAQTVIDTKASALAKLAALGLTEDEIKALL*
Ga0114973_1000146111	F017287	N/A	MDIRRVFEGEAPCDKCDQAQDCKEYEWACRAFSFYVLHGRFEEYTVRHPTRGMFNKIFKEDDKALKNYLKSVKSKEEMGIHDLFEE*
Ga0114973_1000146114	F029048	AGGAG	MLSHIKDVIKDKATISTEPFGVDEERQLISFEVNDLAAIIRDVIQTCADCCLNTTDRDSILELLN*
Ga0114973_1000146118	F006255	GGA	MGELNQLMLEHEEFLESSLDDMEYGGELTQEQVDCIRQACGKPKSKPNALLTEMFTDFGNIFGGNHA*
Ga0114973_100014612	F027399	N/A	MNFTFTWILDKFGFQPKIEITPKPVVKKPAAKKPAAKKTVRKKS*
Ga0114973_1000146121	F014955	AGG	MGKMDIERYIVAATGLGYLVVGFAQYFKGSPSNAFIWLGYAAAQIGLWMNLK*
Ga0114973_1000146124	F017107	N/A	MNDYSENYLRIQKLLKCYHNATLKNQYEKATRIAHDLADETIKLEFATYEQIRKQWLS*
Ga0114973_1000146134	F046243	AGGA	MKHMTRSYPPENAMLRPHKESTLEKQQKKRQDHNPPLELDDSGILNKKANQRMKRKEALSKAMNKYHDPDIVG*
Ga0114973_100014617	F016143	GGAG	MDNDYIYTPVGTDITVRWKLAGWVAPSEQQEYLNKWKYYQELPLRKLDDNARKEYEMVMKKAKVMRIR*