Scaffold Ga0114973_10001276

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10001276
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18901
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (75.76%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001848	Metagenome / Metatranscriptome	626	Y
F006019	Metagenome / Metatranscriptome	383	Y
F012116	Metagenome	283	Y
F068573	Metagenome	124	Y
F071000	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000127614	F006019	GGA	MTFITENNIANLYSALIEFPVFDEYKLPPSAKVDFVIVNDPEMYGQYEPPEQGEPHIITISTAKCSHLDTVMKTLCHEIIHMCIYLETPKTEKYTSHKGLFLKLQKRVANHLGFDPKEL*
Ga0114973_1000127616	F071000	N/A	MIVLNFMNFVGLSFLKLIVVSLLFIAMGFSLAFMMAMEALTNALEYINSYVD*
Ga0114973_1000127624	F068573	GGAGG	VDYKPLTQEQIIGAYSKVFPTRYEPMTIERMVRFARIIEQLHGVKYET*
Ga0114973_1000127625	F012116	AGGA	MKPIAWLVEEFDGTGTLVWSGLMSSEPTEMSWFKDLKSKLHNVTITPLIADTKNIIKITNAKKYDSKKLTEANSGL*
Ga0114973_100012767	F001848	N/A	MILHYIPKQDLRQHWDYVKHGLELVRAKGHPHWIVEDVYCDCYENRSMLFLAINNKQPYGFVVLQPMGQTMHVWAAWSTINDEVLFQQSWQEIQQIAKQGGKTEVTFTSSRKGWERKVKQMNFKPTTWTFTL*