Scaffold Ga0114973_10000513

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000513
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29321
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (78.57%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F007964	Metagenome / Metatranscriptome	341	Y
F008808	Metagenome	327	Y
F009064	Metagenome / Metatranscriptome	323	Y
F050167	Metagenome / Metatranscriptome	145	N
F057118	Metagenome / Metatranscriptome	136	Y
F093272	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000051312	F009064	N/A	MIIELNKDEVRVCTMLAVERWLTKFGSTDQPNYAQGKADGRLEPEINANIRANVCEWAVAKHYNLAWNNPWYPNALHKKRYPLPDVGENLEVRSIRTQDSIAFWGKDKEKVIVGTKCLDLEYFSKVEIFGVAYPEEFMKPEYYDKYINGWRIPIDGFTHE*
Ga0114973_1000051315	F008808	AGG	MDNKVPPCPECGEQFDNVFQATDHLLEDDEEFDPSLILPNGSRLMIGSLLRCLYKYAERPEQVKVITQSAYMTLFTAETQPEAIKDIVEEMIIKSQMMEIDDEIKQLLEGGE*
Ga0114973_1000051324	F057118	AGAAGG	MNLTNYKITIKTTATLVYHISEYDIDRAIELAIDAPYREWEVSEFDAPTGADVIAEEV*
Ga0114973_1000051328	F050167	AGG	MSTTTTQVEDYLASISLTLADLANELATVQFDVASVNGYEPKGTILKALPTQTRFKPKSVWVSLGNGKYKHLTGEKGLIAKHSRLEGYTSVVFRP*
Ga0114973_1000051332	F093272	N/A	VKGEIVPYNPYGVSGSIITPPRDVRSAPAWLGSRSKRFSNLVVRDKSGNIIVAVEDSVAVKLARRTIKNAKPKPLPATLRPLTELELRNMKAQERLEVMAKLLARPADNYL*
Ga0114973_1000051342	F007964	GGAGG	MANAYTASNGNLAGTAGGAGLVQKAYDRLLDFALRSEPLIRSVADKRPAKLA
Ga0114973_100005136	F001094	AGGA	MNTDKLKAIAITYVRAAVAAVTALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGVNSK*