Scaffold Ga0114973_10000471

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000471
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30394
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (70.00%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F006891	Metagenome	362	Y
F007747	Metagenome / Metatranscriptome	345	Y
F007911	Metagenome / Metatranscriptome	342	N
F009066	Metagenome	323	Y
F015449	Metagenome / Metatranscriptome	254	Y
F016963	Metagenome	243	N
F020510	Metagenome / Metatranscriptome	223	Y
F024499	Metagenome / Metatranscriptome	205	N
F031026	Metagenome	183	N
F033352	Metagenome / Metatranscriptome	177	N
F043284	Metagenome	156	N
F043823	Metagenome	155	N
F044969	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100004711	F043284	AGG	MKLLSVINKLNETRDKAIELVGRTISLASDAGEIIAVARTEGKDVQAICEEAGITEEVGKRYEKVAATQKRLTSGDADPSLMRQTYLRIGILPDPITMSEPTEPKHFLFPIMKARQWLASRGAKFIAQDKTLREQFLAEAEPIVKAYNDLRGAA*
Ga0114973_1000047112	F033352	N/A	MTDLTKFRLIENIEVMACRNSAERVVKALNRGEIDQAKQLARKHEIAWHMADREFQDLKPTHTNNDFCDDE*
Ga0114973_1000047118	F043823	N/A	MKKVKTNLTIDPKVKRNGERLAKKGGLSLSAFITTLLVKELANEKKR*
Ga0114973_1000047121	F009066	GGAG	MMSPEHEKHLQGILADLVRDVSAKYRKGQDEHGGALWRRPVWKDAWDEILDLCTYVHTLKMQLSVIGDLALRGASDETVAAAQSRESCRQILAVLEGFPSAEDKQ*
Ga0114973_1000047123	F031026	GGA	MPGGRIALLLISALALCSCATTQTQDGPPPSQDSISYFIYAWDKAERANKPCPQAYRDLYAQALKALSDSLAETERERARNQ*
Ga0114973_1000047125	F006891	GAG	MSTDQVAELSERLSEVRISVARIETRQSVILDLLERSQASLGEYHGRLTNMEREAHTIKTKLWLLALVSGAVVSTAWELIKRRFSL*
Ga0114973_1000047134	F044969	GGAG	MSASLTVNPAKLQKALNAFVGSTKLEAAKEMRIQARMLCVSLANSTQPFGLNARAKALGEKAVTTDIDRVYKSGPTAVREIASLPLPRGKTKTQNAKQAAAALAALMLGKTFGKGKKAAQTHGKARELLGRINHKPYIYTEIGDFDRGAKHASARYGKSKRVPKNQYVRQVVTKESDLAKYFKEKRGNVGIAKSGWAVCAGILGGFKGIPKWVYRHTGGGRVQDRSHTKAGVFSKPYISMTNTIPWISNVISKSTVQRSIDIQVIKMIKRLSIIANYERKKAGL*
Ga0114973_1000047136	F015449	GAG	MVDSFWGTTNIKVAAAASAFGAKLRQMDPVTCIIKEDTGQRQFTFWFTISGGEEAKAEMERTWADMKSDEESPIRYVRAALENRETLLGLMKRAEPIISIQRGGQTLLVSQRASPELKRALLKKL*
Ga0114973_1000047138	F007911	AGGAG	MPAVTMLDRLIEAAFKELLSVTVTGPTYHLSHDKTENMPPSIVIKATLGTEEPVQGSGVFSVPVEIVVDDSYDDTTVDAHTQKCSKVLQAFYDSSPLATRLNATTAIGTARCYNAKLESVEPEADDEERTMRRTYKLAVIAYPNSVAS*
Ga0114973_100004714	F007747	GGAGG	MKDLGKITFGKLRLAPKQVLVDVSYDAKTAKALHAFGLKQLKKDEEAVIQYVIAKALERFSKK*
Ga0114973_1000047144	F024499	N/A	MSEFTEALKESLAALYTQTGTAATIGSTGVTGILSTITRKESVELGGFDLDLNSTFTIDVSAISSAPTIGSILLANSVSYRVASIDTSIGSYVLGLREV*
Ga0114973_100004716	F020510	AGGCGG	VSLADLLAMFSARIIGTYTPEQYAEQVIIARNNRMRWGMGQW*
Ga0114973_100004718	F005502	AGG	MRALCNVVLTFLAFFGFPATQASNVMIDMRPDAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTKLRAGRHCAVDPDIIPLWSRIRVIGAKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEKQFNAMRLPKVAMVEISK*
Ga0114973_100004719	F016963	GGAGG	VIEVLPEQSTHEQLLNRVRSLARELAEAKAALVAAEGRENDLIDRIRAGL*