Scaffold Ga0114973_10000240

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000240
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39915
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (27.66%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y
F020649	Metagenome / Metatranscriptome	222	Y
F028084	Metagenome / Metatranscriptome	192	Y
F034466	Metagenome / Metatranscriptome	174	Y
F047507	Metagenome / Metatranscriptome	149	N
F091423	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000024012	F034466	N/A	MDNHMRNLLLSNYEKSLPSKRDTEDFITNFHQYRAKKKAQQKTHYGLLFACFLILTMIGSIIAKQTKNNLDIQTASGTEKCNTQVMEK*
Ga0114973_1000024016	F020649	N/A	MAIKIKNWWVNLKTYDRFFFISFIPAILFTLWGLSDLYINYFDLLSREDHLQFFLRVFFPVSIATLVTVLERNNRKKLIKDIKNYLND*
Ga0114973_1000024033	F009669	N/A	MLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPSLVAFLPDKAEAYITGIAKLVAVVSGIIFALTVKDAAVTGGTVAQTSEAKDRTNGENI*
Ga0114973_1000024034	F014229	GGAG	MNKLNLIAAALLSVFLGACATTNTGKVDVATSVENTLPYVKPAVVLACTVVLDQAISGNDRIEKAKMINHVAAIVEGLTAGTTPTPEQLQKALNDYLPAQKTHWANYVTVIKDLYAQQFARLNGNGALAVKVLNAIASGCKDATASYVE*
Ga0114973_1000024035	F091423	GAG	MPTGILTAILSAISGIFSAINNVFGAKNTREMKERQEAQKEVDHQSGIENAVKEKDLEQARKHISS*
Ga0114973_1000024036	F010817	GGA	VTPNKIQDDKSSYDATTPKQYDKDNGGLISFIGDDALITRQARERYNNLIKMYRIKFKKEKAIDLVEDSGVKSYKDNFGNELFLIDSEHLVYFGVLNSWLKEKVPADNIIDKTIDKINN*
Ga0114973_1000024039	F028084	N/A	MRKLILILILPLFLLISCSEPNLDSRELPTKYPETPTMGSADDVTKELYKK*
Ga0114973_100002409	F047507	N/A	MTNLNLNLALKTTKKISKLWNWKTKTLLVGFALIVSWVSCLKIGFELKKYNNITNLPNSCFVDAMIYASQCNLLLETNNDIWNNVYGFTFYYKDDIDNIIGHAVCVFEYKNNLWIYDPNWGTSPICQIGNKKEYREKIKLYINKTYPIIVVEDFMLNDWTYVQKIKKNKMNKIYKEVSIHLDENKKE*