Scaffold Ga0105152_10034346

Overview

Basic Information

• Taxon OID: 3300009039
• Scaffold ID: Ga0105152_10034346
• Source Dataset Name: Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2009
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Russia: Lake Baikal
• Coordinates
  • Lat. (^o): 53.7598
  • Long. (^o): 107.9791
  • Depth (m): 0 to .05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019319	Metagenome	230	N
F025023	Metagenome / Metatranscriptome	203	N
F037220	Metagenome / Metatranscriptome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105152_100343462	F025023	AGAAGG	VNDTFEGRLYEVGADRTSVLQLQTDFDSLRPHQRAMVKKIATECNEFGHSISLDSLKSHRRYQIGRGLIDLILSDNCDELLITSLCHSILGVLFKSAGGAVGHLNADEAEQFAVYCRAIRWDEQDIVWIYDTESFGFPNKMKAGK*
Ga0105152_100343463	F037220	AGCAGG	MSDEQDLLAGGGPKLPSLKFEKIGDIHSGIVSDVKKLEDRDPAGVAKTWPNGDPRFVYVITLKTEKEGDANLWARGAMITAIREAAKQASVTELTGNKISVKYASDGEKKAGFNAPKLFAAKVEKVGTDDRW*
Ga0105152_100343464	F019319	GGAGG	MTKKDIQDAIAFLQKMFVGVGDQDRLFEVIAALKEELARRNKR*