Scaffold Ga0099829_10003200

Overview

Basic Information

• Taxon OID: 3300009038
• Scaffold ID: Ga0099829_10003200
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9570
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002975	Metagenome / Metatranscriptome	516	Y
F022852	Metagenome / Metatranscriptome	212	N
F023823	Metagenome	208	N
F069908	Metagenome	123	Y
F073400	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099829_100032001	F069908	N/A	MMSGTGHSQARWIGIFVLVLVISLAELTALILDYQNNRYLRLYVSDNLSMIIVAAIGLLIVAGGAGHVVSRRLGVQKTPGPLVPVFARIGSFVGRRYK
Ga0099829_1000320011	F073400	GAGG	MRSNQLRRFLNSDVVGQLNNGLFFEGHVLNKAGKPSVLERDSQVTRQISAARVKWLVKAVRYC*
Ga0099829_1000320012	F022852	N/A	MHSLSVTIPYSVRISRELLDEMRRLYDRMEPPKPTFSAVLSHIVKLGWDSYKAQKNEEVCLQKVTVAAYPKRIHDQTFQR*
Ga0099829_100032003	F002975	GGA	MADFCSRCGKTLSLIDPLLELKGQRFCEDCYPDVKREHAAASMSDKVDRRQRVAFADDSSDENLRGSIIKGKQALAVKENEFRWDNPSLSLIASALRILTDQNNIMMKQNELILRELESRPATVKSK*
Ga0099829_100032009	F023823	AGG	LGDEAKNNFDRALVDSVSAALDALGPTVKESIFLLLQRRNSISPDQIPKLVGEFVKALQDVLGPTSRVVEKLIIAGLIARKQVPANIAQGRNLLEVVGSVRLSQVSQT*