Scaffold Ga0102829_1078511

Overview

Basic Information

• Taxon OID: 3300009026
• Scaffold ID: Ga0102829_1078511
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1014
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F016963	Metagenome	243	N
F020510	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102829_10785112	F016963	GAGG	VIEVLPDETTHDQLLNRVRSLARQLAEAKAALAASEARENDLIDRIRGGL*
Ga0102829_10785113	F005502	AGGTGG	MRVAACIAALLGLANSQGANVMIDLRPQPKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRILNGKREWLAVDTGTAVKSKKASRGKLPVVDVFAASEHQFKAMKLPKVATVEVSR*
Ga0102829_10785115	F020510	AGGCGG	VSLQDLLTMFSARVIGTYTPEQYANAVRVARADRMRW