Scaffold Ga0066710_101775068

Overview

Basic Information

• Taxon OID: 3300009012
• Scaffold ID: Ga0066710_101775068
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 933
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F000805	Metagenome / Metatranscriptome	883	Y
F002111	Metagenome / Metatranscriptome	592	Y
F066970	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066710_1017750681	F066970	AGG	LYLRHLSSLQFLTYAAFFAVVIAAIVRFLPGVAPPVRTEPYDDDELG
Ga0066710_1017750682	F000280	AGAAGG	MPRRRPARPLFGYRDTGEGIRHSRRAEMRAWVILALIALFYLAWTLTVYFLEPGLR
Ga0066710_1017750683	F002111	AGAAG	MGVAPPFVAYSTLTEAVVPAAEWDSVYPSLQALKGHVQEYPGCQRFDVYVRAEASGEVRVHCCTTWDTPAQPEAFLERGYTFERLPADLEPVDAERSLVMEKVF
Ga0066710_1017750684	F000805	N/A	YLQGHHQTEGKIATWHVDWMSLAWLWGFVLVLALVLVWWIWQYRTTRQRTGIYPVDSFGGFTTELAGPATLFFLLLTVILTAFAVALIVGHIVWGQKF