Scaffold Ga0066710_100082004

Overview

Basic Information

• Taxon OID: 3300009012
• Scaffold ID: Ga0066710_100082004
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4211
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036581	Metagenome	169	Y
F046226	Metagenome	151	Y
F047542	Metagenome / Metatranscriptome	149	Y
F051821	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066710_1000820043	F036581	N/A	MGCLRLLFFQLWKVLLAALVALVFARVDSYVERRHPDSAPGKAWRAYRGRPKKEPRP
Ga0066710_1000820047	F046226	AGGCGG	VITAARSPLRSLGAILFAALLALSLIASTVDALAATPLGDRGGSDSQAENIREFFHGRGITWE
Ga0066710_1000820048	F047542	AGGGGG	MKNTIKGLAFAAMLALSLLASTNNAFAQDTRSGRETAWTDLGPVPTLPGGVTWEDVLDPGGVTWE
Ga0066710_1000820049	F051821	N/A	FNPVVVEAFIKTVVGERRKSARGAPSPHEQVYQQAVEAVRVSL