Scaffold Ga0102810_1006487

Overview

Basic Information

• Taxon OID: 3300009002
• Scaffold ID: Ga0102810_1006487
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4209
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019141	Metagenome / Metatranscriptome	231	Y
F027157	Metagenome	195	Y
F029431	Metagenome	188	Y
F033429	Metagenome / Metatranscriptome	177	N
F063588	Metagenome / Metatranscriptome	129	N
F095495	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102810_100648710	F027157	GAGG	MTYTEFKKEHDYLVTQIIFTESKRSDTLVERLERLRLDNQKHFNQLWSEL*
Ga0102810_100648714	F029431	AGG	MNSAKRRQLKIKARREARINLSVEVFGWSVVILGAAVTAKFMYTALVYIMLF*
Ga0102810_10064873	F095495	N/A	MTEAELKRTDYNTDKPLDLCYNCMSISTNAALAFENGGLLDTEEESLDLEALGFDISNN*
Ga0102810_10064874	F019141	GAGG	MSKIKEELIGYEQNDWVADEDHVRVDEVTEYLMYAMSVAEMQQAARQHIQHDLYTMARSDFEKVHYDTIGMHTK*
Ga0102810_10064875	F063588	GGAG	MQFNIAGMFLNVEPRFGIGLDIESVESKPVWAIKDDELTAMPFDGLVLLLPFFIVSLGNVWTEDE*
Ga0102810_10064878	F033429	AGG	MITDNTTENDLLAETIAELGQSLTELQQVIADIKEQVNYRPEGE*