Scaffold Ga0102960_1018515

Overview

Basic Information

• Taxon OID: 3300009000
• Scaffold ID: Ga0102960_1018515
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2613
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4972
  • Long. (^o): -122.1293
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008882	Metagenome / Metatranscriptome	326	N
F013295	Metagenome	272	N
F076030	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102960_10185151	F076030	N/A	MDKKLPKKGTPGRKKIHFTEEQLLEAERLAGLGFSEESLCKAVFGCSVSTLQRRKKEFNNIDQYIRRGKIKSITEVSSALFDSATGRNGRDPSVSAQIFFLKNKGKEAGNPWADVQQVENNINLSDIISSANARIIEHQADTLPASAPKEIDIKQLNKATKS*
Ga0102960_10185156	F008882	GAGG	MSVTRYNFNKPKINRQELELLNWFLAHTDDNPLINPKALELFKANGYSAKNYQDLVNKIKTILKT*
Ga0102960_10185158	F013295	AGGAG	MKINNLTPKQFARREIIKYLRDLFDNPAKYIKDFDSYTHRQQEEILRFISLDEHRIDKLLNLPMGET*