Scaffold Ga0102960_1008009

Overview

Basic Information

• Taxon OID: 3300009000
• Scaffold ID: Ga0102960_1008009
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4027
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4972
  • Long. (^o): -122.1293
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025289	Metagenome / Metatranscriptome	202	Y
F041784	Metagenome / Metatranscriptome	159	Y
F044516	Metagenome / Metatranscriptome	154	Y
F095522	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102960_10080093	F095522	GAG	MEISIKPGTPPEKVFTERSGSKYDEAIQTAIKNRGEWIQVGSTPVSKRDSMYSTASALRGGRLGNIPNGVELEIICRRVNDRIIMFMKSR*
Ga0102960_10080094	F025289	AGGA	MDICEEKQVSRWSMKQEIIDDLENYDEVTDDNIREICDSLVPVYNSELIDLASHYSGEEYWDIWYNNELGGETPLDILRGNVYSLYYQIGCEVLEERENEE*
Ga0102960_10080096	F044516	GAG	MCRDTGYYEPRNDVAVKVVEEMVERKNYSLMVYYLTMAYQEDQHTYMNDLQWVLQNKFEGVDLEAVKNHVEELLLIDDSDRELFEEIDK*
Ga0102960_10080097	F041784	AGGAG	MYTKTIGYCGVDSGQLFITDPCYIKHQEQGNGQWNMEWVDTDNGRSYKTLPDPTLDGETKNFYSKVCEANGREEAGVEVELGVAFGTTHGDGNYAVQGIFDDDDVMVGIFMDLDGRVKGEFEYDMEDEWA*