Scaffold Ga0104258_1003393

Overview

Basic Information

• Taxon OID: 3300008993
• Scaffold ID: Ga0104258_1003393
• Source Dataset Name: Marine microbial communities from eastern North Pacific Ocean - P1 free-living
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Georgia
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2858
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Microbial Communities From Seawater In Eastern North Pacific Ocean

Source Dataset Sampling Location

• Location Name: eastern North Pacific Ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067106	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104258_10033934	F067106	N/A	LNKKHYDSALQVRDELKANNFEDPSMKVHTMDIYKKSFTFPQIAHNDYAVEQFDALNVAEQNLNADPQNETQMESFLKTADEVANNLKDRYKEQWVDPKDDRNAPASE*