Scaffold Ga0104273_100247

Overview

Basic Information

• Taxon OID: 3300008955
• Scaffold ID: Ga0104273_100247
• Source Dataset Name: Marine bacterioplankton communities from the North Sea island Helgoland off the German coast - probe E228
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Max Planck Institute for Marine Microbiology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1305
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Marine Bacterioplankton Communities From The North Sea Island Helgoland Off The German Coast

Source Dataset Sampling Location

• Location Name: North Sea off the coast of Germany
• Coordinates
  • Lat. (^o): 54.18194
  • Long. (^o): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019836	Metagenome / Metatranscriptome	227	Y
F045764	Metagenome / Metatranscriptome	152	N
F062159	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104273_1002472	F019836	N/A	MQKAELELPVKQFHRLYDLLGDILDHEAETNDFNMENNDIELIEDIRTELFNQIPDEKTYTDYAVTGRSSNPSIQAGKLYKIVEQTSKHGFKLEVEDGEVIYCLFKNCAFLNGRDWTIINVEN*
Ga0104273_1002473	F045764	N/A	MKLTDEEIKEIADRMDDLMWEGFHDIVDDVYRQREDSSYDYEIWDEDIIKVRKELKKCL*
Ga0104273_1002474	F062159	N/A	MPIIMKNLTEEYVNIDWSGICEDFDLEYGDISPEQSFEIDRALGNINEILHDFINQNK*