NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104273_100005

Scaffold Ga0104273_100005


Overview

Basic Information
Taxon OID3300008955 Open in IMG/M
Scaffold IDGa0104273_100005 Open in IMG/M
Source Dataset NameMarine bacterioplankton communities from the North Sea island Helgoland off the German coast - probe E228
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Marine Microbiology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14398
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (10.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Marine Bacterioplankton Communities From The North Sea Island Helgoland Off The German Coast

Source Dataset Sampling Location
Location NameNorth Sea off the coast of Germany
CoordinatesLat. (o)54.18194Long. (o)7.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007892Metagenome / Metatranscriptome343Y
F012505Metagenome / Metatranscriptome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0104273_10000523F012505N/AMSKFMIYNADEVTFILAKTLDEARQWAIMYCDHSHEIIVREVSDIKYKY*
Ga0104273_10000527F007892N/AMGRLTEISPQQNVVNKINAKADFTHNINNTRLERYTVSTQNVFIGKNPSLFLKDTWKIVDDAFNSDQELLGGWLSEDDIYFLDYGLSVTDLKKAMKIAKFNKQLAIYDNVSQKVIPVAD*

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