Scaffold Ga0104241_1003618

Overview

Basic Information

• Taxon OID: 3300008953
• Scaffold ID: Ga0104241_1003618
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT4
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1121
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F012975	Metagenome / Metatranscriptome	275	Y
F073544	Metagenome / Metatranscriptome	120	Y
F080048	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104241_10036181	F012975	N/A	QRSKTKSQESYWDNYDLLIWKETPGGFTHIKGMFRKDQWGVAERIAANEQGIWKLPTKYVKHFK*
Ga0104241_10036183	F000473	AGGA	MEFINKDKDHFKYGVNEWTGEPNKPVFYTPEMAKRIREIKKPDMSLQMDIVKYPDFLTIRLYEDNFLQYEGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRSN*
Ga0104241_10036184	F073544	AGG	VREYYEVIKIVFIHAERVYGSVESLGLYASKVRYQKDGIEIEEVLENDEFTVMDEIVFEHVEESN*
Ga0104241_10036185	F080048	GAGG	MEKILCYCCNKSKNKLNVKKSSLIPINLFMCETCITSKFEPRWVVIL