Scaffold Ga0103484_1010514

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103484_1010514

Scaffold Ga0103484_1010514

Overview

Basic Information
Taxon OID	3300008919 Open in IMG/M
Scaffold ID	Ga0103484_1010514 Open in IMG/M
Source Dataset Name	Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - NA1
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Sodertorn University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	598
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Bay Water → Microbial Communities Of Nutrient Treated Water From Blanes Bay, Barcelona, Spain

Source Dataset Sampling Location
Location Name	Barcelona, Spain
Coordinates	Lat. (^o)	41.666	Long. (^o)	2.8	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058909	Metagenome / Metatranscriptome	134	Y
F103255	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103484_10105141	F103255	N/A	MKSTADILQELSMYANLNHEDDWYLKDKINELKTRI
Ga0103484_10105143	F058909	GAG	MKLTNTEENVLLVALDHMEEHIMELMEERELRGDMWKERLDACKTIRTKIKK*

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