Scaffold Ga0103421_100180

Overview

Basic Information

• Taxon OID: 3300008895
• Scaffold ID: Ga0103421_100180
• Source Dataset Name: Viral communities of boa constrictors from Steinhart Aquarium in San Francisco, USA - CAS06_Heart
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, San Francisco
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 943
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Viral Communities Of Boa Constrictors And Annulated Tree Boas From Steinhart Aquarium In San Francisco, Usa

Source Dataset Sampling Location

• Location Name: San Francisco, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053764	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103421_1001802	F053764	GGA	MVNTEIRLIMYFAAKDGEALYSQSKQDLELTVAQIMSFLLQNLGSN*