3300008895: Viral communities of boa constrictors from Steinhart Aquarium in San Francisco, USA - CAS06_Heart

Overview

Basic Information

• IMG/M Taxon OID: 3300008895
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117940 | Gp0126010 | Ga0103421
• Sample Name: Viral communities of boa constrictors from Steinhart Aquarium in San Francisco, USA - CAS06_Heart
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, San Francisco
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3780346
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Viral Communities Of Boa Constrictors And Annulated Tree Boas From Steinhart Aquarium In San Francisco, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Viral Communities Of Boa Constrictors And Annulated Tree Boas From Steinhart Aquarium In San Francisco, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: San Francisco, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053764	Metagenome / Metatranscriptome	140	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103421_100180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp.	943

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103421_100180	Ga0103421_1001802	F053764	MVNTEIRLIMYFAAKDGEALYSQSKQDLELTVAQIMSFLLQNLGSN*