NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115930_1070973

Scaffold Ga0115930_1070973


Overview

Basic Information
Taxon OID3300008886 Open in IMG/M
Scaffold IDGa0115930_1070973 Open in IMG/M
Source Dataset NameMicrobial communities associated with unicellular green alga Micrasterias crux-melitensis, Germany - (MZCH: 98)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterHPI Heinrich-Pette-Institut
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)741
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Microbial → Bacteria → Unclassified → Unclassified → Micrasterias Crux-Melitensis (Mzch 98) Associated → Microbial Communities Associated With Unicellular Green Alga Micrasterias Crux-Melitensis, Germany - (Mzch: 98)

Source Dataset Sampling Location
Location NameGermany
CoordinatesLat. (o)53.560155Long. (o)9.859606Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002471Metagenome / Metatranscriptome556Y

Sequences

Protein IDFamilyRBSSequence
Ga0115930_10709732F002471N/AAPMASSAKKNHAFMYHDRRQTRNAYRSYNAYDDFDSHAMFASSSSYMHGRNMSRRNAIHHVPRKNIIHAPRKVMNEPSTIYRALNASFAICRKDRKIVARKLGAKCKGDKTCIWVPKDICTNLVGPNKSWVPKSQA*

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