NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115930_1017806

Scaffold Ga0115930_1017806


Overview

Basic Information
Taxon OID3300008886 Open in IMG/M
Scaffold IDGa0115930_1017806 Open in IMG/M
Source Dataset NameMicrobial communities associated with unicellular green alga Micrasterias crux-melitensis, Germany - (MZCH: 98)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterHPI Heinrich-Pette-Institut
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2148
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Microbial → Bacteria → Unclassified → Unclassified → Micrasterias Crux-Melitensis (Mzch 98) Associated → Microbial Communities Associated With Unicellular Green Alga Micrasterias Crux-Melitensis, Germany - (Mzch: 98)

Source Dataset Sampling Location
Location NameGermany
CoordinatesLat. (o)53.560155Long. (o)9.859606Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024880Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0115930_10178064F024880AGGAMSVAITAQVPVAPTAPEAASPQVGQGTGPTGEQGVADFAKARVDVADANVAELTNSVASSGEMMGKLREFIDKSHQTDMKNQATRAKQRAAAADAETDIATLDTLGSLGNVGSLSQFNPISHSGSFGQHGSFNQLSSLGLPPGPASAPLGSGGGFEGPGRLSAMSAKMTNDLMDGAIHRMWTQVVVHGTTSVTKTVMTLLKGQ*
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