Scaffold Ga0115930_1001015

Overview

Basic Information

• Taxon OID: 3300008886
• Scaffold ID: Ga0115930_1001015
• Source Dataset Name: Microbial communities associated with unicellular green alga Micrasterias crux-melitensis, Germany - (MZCH: 98)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: HPI Heinrich-Pette-Institut
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25055
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Microbial → Bacteria → Unclassified → Unclassified → Micrasterias Crux-Melitensis (Mzch 98) Associated → Microbial Communities Associated With Unicellular Green Alga Micrasterias Crux-Melitensis, Germany - (Mzch: 98)

Source Dataset Sampling Location

• Location Name: Germany
• Coordinates
  • Lat. (^o): 53.560155
  • Long. (^o): 9.859606

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039184	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115930_100101523	F039184	GGA	MDADWGFMRACDLARTADESFKLAWIAEIEAAWQVTDLDHGDFGFILAMADGRRLYWRYTSEDTGAGRPEDLAVTELAPGEMPNGDAPWSRPEALNKRLAVLRRLA*