NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103388_101830

Scaffold Ga0103388_101830


Overview

Basic Information
Taxon OID3300008875 Open in IMG/M
Scaffold IDGa0103388_101830 Open in IMG/M
Source Dataset NameMicrobial communities of Wadden Sea tidal flat in Germany - 1450 fallingTide
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterBielefeld University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)694
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Tidal Flat → Microbial Communities Of Wadden Sea Tidal Flat In Germany

Source Dataset Sampling Location
Location NameWadden Sea, Germany
CoordinatesLat. (o)53.73Long. (o)7.67Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033314Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0103388_1018301F033314N/AMELGMVLAGTVDFIVGIDKKLWIGFVLFENCYSFFGTQGAVFSCKGFGYTDWVALPDDAAGYPFALVGWSGV*

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