3300008875: Microbial communities of Wadden Sea tidal flat in Germany - 1450 fallingTide

Overview

Basic Information

• IMG/M Taxon OID: 3300008875
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117938 | Gp0125977 | Ga0103388
• Sample Name: Microbial communities of Wadden Sea tidal flat in Germany - 1450 fallingTide
• Sequencing Status: Permanent Draft
• Sequencing Center: Bielefeld University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21057347
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Chaetocerotophycidae → Leptocylindrales → Leptocylindraceae → Leptocylindrus → Leptocylindrus aporus	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Wadden Sea Tidal Flat In Germany
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Tidal Flat → Microbial Communities Of Wadden Sea Tidal Flat In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Wadden Sea, Germany
• Coordinates
  • Lat. (^o): 53.73
  • Long. (^o): 7.67
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033314	Metagenome / Metatranscriptome	177	Y
F062410	Metagenome / Metatranscriptome	130	Y
F082131	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103388_100408	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Chaetocerotophycidae → Leptocylindrales → Leptocylindraceae → Leptocylindrus → Leptocylindrus aporus	1066
Ga0103388_101830	Not Available	694
Ga0103388_104535	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103388_100408	Ga0103388_1004081	F062410	MDKGSKFKAEVRDSLRNEFGINIKVITSRNPQSNSMVERCHQTFGKMLDSAQVKDKRDLDETFGWEPILSACRKAMNSTVHTTARATPTQLVFGRDAMLNASFEADWQFIKQRKQKLITHNNMRENKARVAHTYNVGDNVVVKAGVQRKHGENPYIGPYRVTHVYDNGTVRLEKVANNGGAVSETWNIRNIEPRKA*
Ga0103388_101830	Ga0103388_1018301	F033314	MELGMVLAGTVDFIVGIDKKLWIGFVLFENCYSFFGTQGAVFSCKGFGYTDWVALPDDAAGYPFALVGWSGV*
Ga0103388_104535	Ga0103388_1045351	F082131	MTNAGRPSPCSHHIDIQHFALQEWKHRGDTLMEHIPGIINPADGLTKPLGWVLHHHHSCCLMGHFGLPLVAAAA*