Scaffold Ga0115888_108461

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115888_108461

Scaffold Ga0115888_108461

Overview

Basic Information
Taxon OID	3300008807 Open in IMG/M
Scaffold ID	Ga0115888_108461 Open in IMG/M
Source Dataset Name	Wastewater viral communities from SBR reactor in SCELSE, Singapore - ContigAbv1k
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6899
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Sbr_Wastewater → Role Of Bacteriophages In Aerobic Granulation

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.345254	Long. (^o)	103.678179	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018530	Metagenome / Metatranscriptome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115888_1084617	F018530	GGTGG	MSSTALPTLPGMSPCTHAFVQAVRLYMRDFEQLNRLVAGEESSDRMIAWAVLDAISDFNGTPHFTTFQLQDLLAMNQHALLLRMTVVSLLESVGLLQTRNHINYSTGGTSVGVNDKTPLIMNWLRYYKASTEQMKQRVKVAINIGSILGPSNSGVFSEYWSVHGVYAAY*

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