3300008807: Wastewater viral communities from SBR reactor in SCELSE, Singapore - ContigAbv1k

Overview

Basic Information

• IMG/M Taxon OID: 3300008807
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118556 | Gp0137139 | Ga0115888
• Sample Name: Wastewater viral communities from SBR reactor in SCELSE, Singapore - ContigAbv1k
• Sequencing Status: Permanent Draft
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 52138146
• Sequencing Scaffolds: 22
• Novel Protein Genes: 23
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA395	1
All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanococcoides → unclassified Methanococcoides → Methanococcoides sp. AM1	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Role Of Bacteriophages In Aerobic Granulation
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Sbr_Wastewater → Role Of Bacteriophages In Aerobic Granulation

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Singapore
• Coordinates
  • Lat. (^o): 1.345254
  • Long. (^o): 103.678179
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F001484	Metagenome / Metatranscriptome	686	Y
F002371	Metagenome / Metatranscriptome	566	Y
F004519	Metagenome / Metatranscriptome	434	Y
F004580	Metagenome / Metatranscriptome	432	Y
F015573	Metagenome	253	Y
F016728	Metagenome / Metatranscriptome	245	Y
F018530	Metagenome / Metatranscriptome	234	Y
F029893	Metagenome / Metatranscriptome	187	Y
F032964	Metagenome / Metatranscriptome	178	Y
F058147	Metagenome	135	Y
F058798	Metagenome / Metatranscriptome	134	Y
F063362	Metagenome	129	Y
F078200	Metagenome / Metatranscriptome	116	Y
F082719	Metagenome / Metatranscriptome	113	Y
F083890	Metagenome / Metatranscriptome	112	Y
F083928	Metagenome	112	Y
F086799	Metagenome / Metatranscriptome	110	Y
F094884	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115888_100152	Not Available	4014
Ga0115888_100659	Not Available	1206
Ga0115888_103142	All Organisms → Viruses	1235
Ga0115888_103529	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	5753
Ga0115888_103547	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2061
Ga0115888_108461	Not Available	6899
Ga0115888_110943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3036
Ga0115888_111146	Not Available	1530
Ga0115888_111623	All Organisms → Viruses → Predicted Viral	1410
Ga0115888_111687	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA395	1133
Ga0115888_112315	Not Available	3275
Ga0115888_112478	All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon	1747
Ga0115888_114770	All Organisms → Viruses → Predicted Viral	1092
Ga0115888_116944	All Organisms → cellular organisms → Bacteria	8059
Ga0115888_117317	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2090
Ga0115888_119727	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium	2523
Ga0115888_124002	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanococcoides → unclassified Methanococcoides → Methanococcoides sp. AM1	8873
Ga0115888_124058	Not Available	1290
Ga0115888_124209	All Organisms → Viruses → Predicted Viral	1352
Ga0115888_124300	Not Available	1581
Ga0115888_125789	Not Available	1521
Ga0115888_125906	All Organisms → cellular organisms → Bacteria → Proteobacteria	54987

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115888_100152	Ga0115888_1001523	F004580	MIARFINGFISILIGVSLIGPISDQVNTAAATGGSLYNASSWGATVLKIVPGFFAIAILAIGIAVLYGNLRDAGMA*
Ga0115888_100659	Ga0115888_1006592	F000388	MKVIKVTKEYFQTEDEKVYFFEPLEKEISIEDMQKIVDANEKLVKELKTDDCIKPV*
Ga0115888_103142	Ga0115888_1031422	F004519	MATFRKYAFPKQKDADKVLALCTGTTAAVDLGIIDSLICYDILWESDAPAIATQFETWPTPCGVHSFLGWDEQYTEDYNQHQSL*
Ga0115888_103529	Ga0115888_1035294	F015573	MVEEVSDSDRLRMIHTEIKTIRDLVSKAVNAMIEAESEVPEKMRRFIMYMHDMHDVKNLYDEHGIPCPPYVLREVERCDDRLRQILETLHTDGGAFEKVRQEMAADPNNRWDHTRLLSKPQETKS*
Ga0115888_103547	Ga0115888_1035471	F001484	NRVGMDMRSGIEAWTHPCQMQAYEEIGQLVQMIWKEPKEQKLDMYFDGMQMAGAPVKADYNWNMKRIDFFKKGTWGWGETLPIGFYTTDGRKIFEIRSASGGVSASDIFYMTVGRQSYVKNPAAVAYIDNLAIPAGYQV*
Ga0115888_108461	Ga0115888_1084617	F018530	MSSTALPTLPGMSPCTHAFVQAVRLYMRDFEQLNRLVAGEESSDRMIAWAVLDAISDFNGTPHFTTFQLQDLLAMNQHALLLRMTVVSLLESVGLLQTRNHINYSTGGTSVGVNDKTPLIMNWLRYYKASTEQMKQRVKVAINIGSILGPSNSGVFSEYWSVHGVYAAY*
Ga0115888_110943	Ga0115888_1109438	F063362	MANMLSGIIFLSIGVVVLANVFIKTVKDTNTTGWTSGETALWGVLTLAGIAGLVLGILNVFGVV*
Ga0115888_111146	Ga0115888_1111462	F000388	MKVIKVTKEYLETEDERVYFFEPLEKEISVEDMQKIVDANEKLVKDLKDAKD*
Ga0115888_111623	Ga0115888_1116235	F032964	FQMAGMPVRESFSWNKTRIDIVNLDVWGRGETLPLGFYTSDGRKIFELRGASGGVATSEIFYMVVGTQLFVSNPAATAYIDNLAVPAGY*
Ga0115888_111687	Ga0115888_1116871	F086799	NKIVYSRLISKGNYENAKIEIELEVEAGEKASDVFEAAKKWVEKRIAVEKLSSFTIERAQKVMDDKRNHTLAQIEEAEEILAKVKVSDDELPF*
Ga0115888_112315	Ga0115888_1123154	F016728	MNGLTVCVTCVWAGVDSAWEQEKLEARKMLENAAESHTSGARFVSLRV*
Ga0115888_112478	Ga0115888_1124782	F094884	MANKLIGQTYVNILKDEEGQVRFAYGYEIDDKEVSLNDLAMLDSFLDTLKERAKQDFQERLDKNDKEFSIEQNPED*
Ga0115888_114770	Ga0115888_1147702	F002371	MGIKLLYKDNIMPSINKRGGTRKGSGAKKKYGEHTKTISFRCPLSKVDELKIIVKSKLSEWRSI*
Ga0115888_116944	Ga0115888_1169446	F078200	MAVYANSSNQVAALKELYKDDSWVMKDLVYKQNPLLALLPKDESPSGMAGK*
Ga0115888_117317	Ga0115888_1173173	F058798	MAEHRVGADNPMLLFIDPLGGTSYDTVVCLTRVSKSDTVDSADASSACGPNKSIGNLSISYSAEGYHLQDPDSGKISGTSLRILLRDKATVGFKIAPATPVVGDEIEEGTGFLSSLSSDYAFDADATFTLELQPFGTPTITIES*
Ga0115888_117317	Ga0115888_1173174	F058798	MAEHRVGAGAPMYLYIDPAGGTDYSTVVCLTRVSKSDSVDTVDSASACGPNKSIGSVNISYSAEGYHIQDADTGKISGTSLRLLLRSRTTVGFKISPETPVEGDEVETGTGFLSSLSSDYAFDADATFTLELQPFGSPVITVFVPTTRILAENSDNLITENNNYLIQE*
Ga0115888_119727	Ga0115888_1197274	F058147	MNRKSIIVFIKGDRVETYGNLKKCCEFENLKYHTLARLKFPIRINDVVIHKTPFK*
Ga0115888_124002	Ga0115888_1240026	F082719	MARGQDFITLARQHNKAIWDGINALVAMQREWNALDYGNTLPDGEGSNADYTADEIGAVVFDTANAFVTVLNAGHATNMSKLL*
Ga0115888_124058	Ga0115888_1240581	F029893	MMQDSLTVAANSVSANVLAGQLYEFVRAGQPIRLLATGSATGLRLSMLIGMAIINDQALNLQNRFPLVPDDVIHTGRAPVSGRMVLTFRNTTAGALTAFWRIDL*
Ga0115888_124209	Ga0115888_1242094	F083890	MSHETFAPKTAAQRQAERKARELAAGRVQWKRWVHTDDVPALAEYADKLARRRARAEQKAG*
Ga0115888_124300	Ga0115888_1243003	F002371	MANKKETRGGARQGAGPKPKYNEETKTVAFRCPLSKVDELKLYVRSKLSEWLIK*
Ga0115888_125789	Ga0115888_1257891	F082719	MSANRDQNFITSVRQANQKIWEGLNELVAAQREWNALDYGTTLDAGSGANEGIVRAEVGAVTFDTCNAFVGVLNAGHATNMAKLL*
Ga0115888_125906	Ga0115888_12590676	F083928	MNALQWLNILRPAIPMSVERPGTSMSNAELRRHIAQGGVLVNSERIAADELVDFPVFSLVFFPKGARRTTII*