Scaffold Ga0103700_100918

Overview

Basic Information

• Taxon OID: 3300008794
• Scaffold ID: Ga0103700_100918
• Source Dataset Name: Microbial communities from freshwater in the western basin of Lake Erie, USA - 882-1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 827
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: western basin of Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.76
  • Long. (^o): -83.31

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023279	Metagenome / Metatranscriptome	210	N
F035195	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103700_1009181	F035195	N/A	LKTEAEVVELVQDSLNNVETEKSFEDNYEVMLKLFCAIKRLKSIRPKGTFRAVGVSFKQASTPQK*
Ga0103700_1009182	F023279	N/A	VTTEKMADSSKENTEAIVDTIKSELAIGFKNCIDKIDTEKKVVDRYNWEIYVKINKILHNSRRLDPQWTIEGDIGNSWSLNSILERDFKSKVLNIDLSEIDSIDLEGYEELHQSLKDLRVNNPGWSINKTRRSSPILLTPTQIGLQEESTS*