Sample 3300008794

Basic Information
IMG/M Taxon OID	3300008794 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117964 \| Gp0126289 \| Ga0103700
Sample Name	Microbial communities from freshwater in the western basin of Lake Erie, USA - 882-1
Sequencing Status	Permanent Draft
Sequencing Center	University of Tennessee
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300008794 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0117964 | Gp0126289 | Ga0103700

Sample Name

Microbial communities from freshwater in the western basin of Lake Erie, USA - 882-1

Sequencing Status

Permanent Draft

Sequencing Center

University of Tennessee

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	6425982
Sequencing Scaffolds	17
Novel Protein Genes	18
Associated Families	18

Dataset Contents

Total Genome Size

6425982

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	1
Not Available	15

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales

Not Available

Ecosystem Assignment (GOLD)
Name	Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa

Ecosystem Assignment (GOLD)

Name

Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → freshwater lake → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	western basin of Lake Erie, USA
Coordinates	Lat. (^o)	41.76	Long. (^o)	-83.31	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

western basin of Lake Erie, USA

Coordinates

Lat. (^o)

41.76

Long. (^o)

-83.31

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F007520	Metagenome / Metatranscriptome	349	Y
F008744	Metagenome / Metatranscriptome	328	N
F009205	Metagenome / Metatranscriptome	321	N
F012015	Metagenome / Metatranscriptome	284	Y
F020094	Metagenome / Metatranscriptome	226	Y
F022815	Metagenome / Metatranscriptome	212	N
F022867	Metagenome / Metatranscriptome	212	N
F023279	Metagenome / Metatranscriptome	210	N
F024960	Metagenome / Metatranscriptome	203	N
F029337	Metagenome / Metatranscriptome	188	N
F029723	Metagenome / Metatranscriptome	187	N
F034947	Metagenome / Metatranscriptome	173	Y
F035194	Metagenome / Metatranscriptome	172	N
F035195	Metagenome / Metatranscriptome	172	N
F038100	Metagenome / Metatranscriptome	166	N
F075719	Metagenome / Metatranscriptome	118	N
F081389	Metagenome / Metatranscriptome	114	N
F098725	Metagenome / Metatranscriptome	103	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0103700_100129	All Organisms → Viruses → Predicted Viral	2113	Open in IMG/M
Ga0103700_100164	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	1884	Open in IMG/M
Ga0103700_100478	Not Available	1152	Open in IMG/M
Ga0103700_100543	Not Available	1074	Open in IMG/M
Ga0103700_100791	Not Available	886	Open in IMG/M
Ga0103700_100916	Not Available	828	Open in IMG/M
Ga0103700_100918	Not Available	827	Open in IMG/M
Ga0103700_100945	Not Available	816	Open in IMG/M
Ga0103700_100983	Not Available	798	Open in IMG/M
Ga0103700_101088	Not Available	760	Open in IMG/M
Ga0103700_101671	Not Available	614	Open in IMG/M
Ga0103700_101879	Not Available	577	Open in IMG/M
Ga0103700_102065	Not Available	548	Open in IMG/M
Ga0103700_102110	Not Available	541	Open in IMG/M
Ga0103700_102151	Not Available	536	Open in IMG/M
Ga0103700_102327	Not Available	509	Open in IMG/M
Ga0103700_102391	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103700_100129	Ga0103700_1001291	F075719	MTLKDLVVEPRGGTSVVLDMTIKDLVKESKSDTFDVEESHKDTLDPDMSLKDLACDSVGNYPRVLIPRTDLMSELSHNRKVCDQIMKSKHFKGKHPQKGEPKESSTGPRGFGTLMEPNTLDKKYLTGNFLGKMVPKTGRSRAGFERLMEFGESESSDEEVNFRNHKKVVGLKPPRQLNNNRKFGTVVQPANTSRFDNVYHRVYEHQKQVVEIDNENWFRKLCCCRKSPKEIVTIVDFSVGTRLKKDTSAV*
Ga0103700_100164	Ga0103700_1001646	F020094	FISYMYFSFVNNQKLLSYVININLSLTNTLINVNDVNGNPKFFYSAGMFNLQKKQKTRQPKAIITILRALLLKSKFFKTKPVAVHFNNLFFKHQSYVFKKLKRKIFAKLVISYLYKAHNGCRLRKKKRIKIRTRTRKL*
Ga0103700_100478	Ga0103700_1004781	F081389	VLSVISCFQQGGLGGMGLRGGMQGGLAEGFIWGRQDDSTRRNECQYVSDLNIISCFRGLVECETIAHFEELSQNYEIFGIGTTDMIKFNLYPRNFSDSVYGDCRQQTTTGNWVELSFYATGQQPLTTSRGLMVKDATCYKRIIDLIKVIDYQVMVDLVTKQRVTMLGYINNLSGETIRIQREQNNGTLPFGKSLGKKLDLDIGRKFDRMEVDSVVAGNPLMAPVSGFIWGSLEDTNRRFECQYSSELMTLSCFRGLVKCETLPRLDDLAQTYEIFGLGSTDMTTFHLYPRNYADTTFADCRVPLTTGKTVELNLCHTGVDCMGLMVRDTVCYQKIVDVLKTVTEPVMVDVTGDNTNVKVSMMGYVINV*
Ga0103700_100543	Ga0103700_1005431	F009205	MSSYGVFEIDLFIKGKKFTHPVNVIEELNENIIGIDFIHAHKLTYDVISRKVMFAGAGTNSIMALKNTVLPAMTSTVIKAKFKGTRDEKATYVANICAPRTPMVSGMPSIVNIDENNICNIIVENCAPYDVTLERDDILGVMETETDELVPLTDDFISSVCQDIHNRFPKVKRKRLSRDEIKRRCHLQVPEEFHERYLDILCKHQDALSIDKYDLGLAKDFKQ
Ga0103700_100791	Ga0103700_1007911	F022867	MKSYILSCMVIENAAQNIQLGIIGGKGVTTILGYNIEISRQIDGLSEILRHTNDITPDMVPWMTSILGHMVFLRNTIHGVDINDLVGLLRPLQLIKLGVTESRIGMEEAITNVDKKSLTEKWENELNLPH*
Ga0103700_100916	Ga0103700_1009161	F098725	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPQPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPALPPMLRPPMLVRTSRPPMFHQQQHRPLRQHFQPPYRQPPP
Ga0103700_100918	Ga0103700_1009181	F035195	LKTEAEVVELVQDSLNNVETEKSFEDNYEVMLKLFCAIKRLKSIRPKGTFRAVGVSFKQASTPQK*
Ga0103700_100918	Ga0103700_1009182	F023279	VTTEKMADSSKENTEAIVDTIKSELAIGFKNCIDKIDTEKKVVDRYNWEIYVKINKILHNSRRLDPQWTIEGDIGNSWSLNSILERDFKSKVLNIDLSEIDSIDLEGYEELHQSLKDLRVNNPGWSINKTRRSSPILLTPTQIGLQEESTS*
Ga0103700_100945	Ga0103700_1009451	F035194	AAERFNLLQKLRKLAHTNATEKGEKTKEQYDKNSMPHNFNIGDKVLIANDFDTTKNPKLVPNWKGPGEIIDINDTNARIKFKNKVKVLNVAKLKHFYENVEKSAEKESEATNFNQDFNQANEKARPDFNDIFNKAHNEGPITRAKAKLIKYKDAAQLALLLLKSEKDTIDSLCDPSKNCGSCESEENYLAESKTLPFQWRQLKLAENRCKQWRLKLMKKEAEKINSTEERCHSNVPERFREPLMKVAYKLLSRDEATFEELTPTEQKLWSS
Ga0103700_100983	Ga0103700_1009831	F024960	GRYAATSTYIHVRIPFNFSKILDTKITIEQQYQVLLDKHEDPFKTIAKTTTDVSLMTISASIEDFQDVIKALPQTTEIDLPGRPKRFIALGIAIAAAALSSYNAYKITELNNEISALKSKTDLLVDVSHLHEAHLHHLEDKTDATNKLLADLLESNVWFTAKITDAVEKKFQSVVHHHENVVKSAQHHRLAPGALPHDVLDEILNHTLAVARKRNMVSFVNYASDLFQVEVSHLYDPKTMQFTLIVHIPLVSNANLLELYEFLPL
Ga0103700_101088	Ga0103700_1010881	F012015	ATEQGLKSKHSFDKNAMPHKFKIGDKVLISNDFYVGKNPKLAPTYTGPGEIIDINDTNAKVKINNKIKILNVNKLKLFLQEHQSDEEQTFLDYNFNDAESEKPLTRARAKLINYKNAAQLALLMLKEEGGSSEIETIDSLCSEPCPSCDTENDYFKLNPPKRNFTQKCNNCEEFKKLFLKLKEREEQCYQLKQQINFARQHRLHQINQIKSVDTKLKTGIAESLREPLMKIAQHLLISDKNTFEQLTPEDKKL
Ga0103700_101671	Ga0103700_1016711	F038100	PLSLTWFTSHEEPLPIWALYSHTAYTFAKTFNQLMINAPRFKVTETSRSFPADDVESNRQIQIKTVDNCPTDNIVKISESYRGYRSLTSVENCIFIRKQSIDKLLQVCVQTLNTLLLPPKEDLNLSFGCYASRMLKDHSSGMSYLVDITREPMQEHGFRFVRIFQQTTFNQKDVGNVDIPWNHFDVFTRELNGFLKTPGRLATF
Ga0103700_101879	Ga0103700_1018791	F029723	MQLSVYWRKIAAEALKLLNDIHLDENHDSEDNLSAYKLFHEQLRELKRIDPVRPFSQTTMGPTHPIVTSSCNCTLCDPSSEDIDSEDSTGSVLI*
Ga0103700_102065	Ga0103700_1020651	F022815	HSFRSYKKLLFTNPMHPVQTERYSFSLFNWELALIFCWTNLRYIVIFTIDSYQERFWSASLDIDCNTPICTCVDTENLAETFIGKLLSEEQNQTD*
Ga0103700_102110	Ga0103700_1021101	F008744	DKMHSLGIYEIDIFIKGKKFTHHINVMDTLTDNIIGIDFMHKNKLHYDVQTRQVKIAGIEGDQIVAIKEQVLPALASTVVTAKYKGKTEPNVHFIASIFAPKNPMLSGMPAIVTVDKNNNCKIVIDNCAPYDVIIDRNDILALMDRETEQLQPLEDSVISAILTDIDKKLPKVPKKKLS
Ga0103700_102151	Ga0103700_1021511	F007520	PGPWDAFGVTALSIGRSRNKTERLVLYNVNVPVHLISNENVYNVIRDTIVHDFDNNSGIYFQLSAVYTLVNRDTGDLRTWTGSFNPRNRQPSQLSTHRRFEADTFIDFARANSSIEVVLQKLTANYATAGQTSVWSLQDLKSIIFSF*
Ga0103700_102327	Ga0103700_1023271	F029337	STAEDAHSRFGRLQSNTLKMNSREARARRSFELYFDTKTSPIDQLIFITKVFNEIQTGRALLTSPRGISFSRSHPAVYLELLQLYYDPFITSSMNDAQNCLSPSYRHPAVVEFIETTLVRFRTSATNRLKQEPIPLLQELFANSYLFDTIRIRNPADPRM*
Ga0103700_102391	Ga0103700_1023911	F034947	ADSINRSKPPKENHRKVDKRSAGPGKDTQTRQVA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008794: Microbial communities from freshwater in the western basin of Lake Erie, USA - 882-1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences