Scaffold Ga0103638_1002835

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103638_1002835

Scaffold Ga0103638_1002835

Overview

Basic Information
Taxon OID	3300008785 Open in IMG/M
Scaffold ID	Ga0103638_1002835 Open in IMG/M
Source Dataset Name	Microbial communities from wetland soil in Czech Republic - R1_cDNA
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Friedrich Schiller University of Jena
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	590
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Wetland Soil → Microbial Communities From Wetland Soil In Czech Republic

Source Dataset Sampling Location
Location Name	Czech Republic
Coordinates	Lat. (^o)	50.14667	Long. (^o)	12.45083	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078329	Metagenome / Metatranscriptome	116	Y
F091420	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103638_10028351	F078329	AGG	MSAPNRTEPQASFKALKRFSAKQKGVELRGRRLAVLIAEASTGHAGGERGWEADHLEPKK
Ga0103638_10028352	F091420	N/A	EQSSRVERSGTGTMIRRLITKSERQAGSEGKSGGPRGELFSGTLN*

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