Scaffold Ga0103544_103995

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0103544_103995

Scaffold Ga0103544_103995

Overview

Basic Information
Taxon OID	3300008752 Open in IMG/M
Scaffold ID	Ga0103544_103995 Open in IMG/M
Source Dataset Name	Microbial communities from the gut of humanized mice in USA - E13.FECAL.14dpc
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	CCME-COLORADO
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	502
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Microbial Communities From The Gut Of Humanized Mice In Usa

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	38.65	Long. (^o)	-90.26	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103544_1039951	F047125	N/A	DLLDVVLLLMVLGVMLSGFWAADALDHMRKEILQQEGKRRGWWS*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.