Scaffold Ga0115616_111922

Overview

Basic Information

• Taxon OID: 3300008720
• Scaffold ID: Ga0115616_111922
• Source Dataset Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159753524 replicate 1 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 531
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059631	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115616_1119221	F059631	N/A	LWLKTFSVKPKVVKGSQAECGGAMVGRMSHVTCLEGTFVETIKGWQSGWFYITEPRDPEWAVAPEFRSGFPTQLTSWKEKGLLWGSSEELTGLQACIQKLVNKKLKLVNIVQVMLIRRILPCQHRACNLWEFDPAKHQTLRELFGSSHKDIWKVLFKSGKSWPDSAEDRGYQLSRPA