3300008720: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159753524 replicate 1 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008720
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053328 | Ga0115616
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159753524 replicate 1 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27464340
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum aestivum	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006329	Metagenome / Metatranscriptome	376	Y
F027342	Metagenome	195	Y
F032472	Metagenome / Metatranscriptome	180	Y
F059631	Metagenome	133	Y
F063778	Metagenome	129	Y
F076912	Metagenome	117	Y
F097527	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115616_102159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	2041
Ga0115616_103002	Not Available	1606
Ga0115616_105489	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii	1010
Ga0115616_106183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	924
Ga0115616_106749	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78	860
Ga0115616_110148	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum aestivum	614
Ga0115616_111922	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae	531

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115616_102159	Ga0115616_1021595	F097527	MIYFKMEKIGNSTKTEKKKTRSENLVIITIPAAGVEPARPCGHWIL
Ga0115616_103002	Ga0115616_1030022	F076912	LGKSALLSNGKGSNADKVQDSETSLLVSKKADKNYLDDSEGTQKSCLDVVFELLATTAGTSSSNSLPESVRFLESQLQVERHRSDVMRQEAEGLRKSLQNSDAYFLVQQQALEDLSAKQEKVNKLAKHLASIMGTQDIVS*
Ga0115616_105489	Ga0115616_1054892	F006329	ERLNLVEEENNYLKEKIKNKEEKMILELHVADVVDDHKIKMDAMRLKIRKIRKYAIDTEAWYHYAVGSIVTLVAIMIAFVFALKCFT*
Ga0115616_106183	Ga0115616_1061831	F063778	SEGTKQQLLQQLQNALGLVADADTSAHDVAAITQSAADGHQLTEVMLQQMTAIEAYLKNCQTSINDAIDNIEAIPLDPPPED*
Ga0115616_106749	Ga0115616_1067491	F032472	MAPPIINNDAVQGETFLPGQIFVFGGFALRANSLGHLEQIESYAPGHQVRFGSLNYTADIRGDLIFDGFEPQPSAPHCHDGHDLALQPDSTLEAALESAPIFNSKPAAQIEDGWLDTASGATISTAIEPNTIPVPCKARDSEVLDSIPDSEYSAPLPIEPDWALIMEFTTADIFQHSPF
Ga0115616_110148	Ga0115616_1101481	F027342	LESKAQAAELATALETANFAKAEAQKALQELEEMRKIAAGKAFFMQSKHVSFNCLLLTRIRSSPGAFADLPHSVSDAAAFYRAEEGSSTEKVFWSQYAEAGHSVPLSDQLKQLVELHKAAEQAMKGLIVRLWPKEAMPGSYFGLVRRLVDACPWVEVIKHSACIEGARRALAHAKVHWGKLDAEKLVKDGRLLVITGCGLAACS
Ga0115616_111922	Ga0115616_1119221	F059631	LWLKTFSVKPKVVKGSQAECGGAMVGRMSHVTCLEGTFVETIKGWQSGWFYITEPRDPEWAVAPEFRSGFPTQLTSWKEKGLLWGSSEELTGLQACIQKLVNKKLKLVNIVQVMLIRRILPCQHRACNLWEFDPAKHQTLRELFGSSHKDIWKVLFKSGKSWPDSAEDRGYQLSRPA