Scaffold Ga0103927_12216

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103927_12216

Scaffold Ga0103927_12216

Overview

Basic Information
Taxon OID	3300008696 Open in IMG/M
Scaffold ID	Ga0103927_12216 Open in IMG/M
Source Dataset Name	Planktonic microbial communities from coastal waters of California, USA - Canon-27
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	649
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F075867	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103927_122162	F075867	GAGG	MNPALKPSTKHFLQYDAATFEHEGFKTLNGRISQLALEPRFWSVSVKVITESYDGLKKIKDHFNFKTSERCKLSDLRDQVKREVLDKDDYLPVCTQCLVTARVMM*

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