3300008696: Planktonic microbial communities from coastal waters of California, USA - Canon-27

Overview

Basic Information

• IMG/M Taxon OID: 3300008696
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117987 | Gp0126516 | Ga0103927
• Sample Name: Planktonic microbial communities from coastal waters of California, USA - Canon-27
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4752080
• Sequencing Scaffolds: 22
• Novel Protein Genes: 23
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas veronii	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas helleri	1
Not Available	12
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Avibacterium → Avibacterium paragallinarum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Microbial Communities From Coastal Waters Of California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000007	Metagenome / Metatranscriptome	8691	Y
F010914	Metagenome / Metatranscriptome	297	Y
F011139	Metagenome / Metatranscriptome	294	Y
F011936	Metagenome / Metatranscriptome	285	Y
F019483	Metagenome / Metatranscriptome	229	Y
F019998	Metagenome / Metatranscriptome	226	N
F032247	Metagenome / Metatranscriptome	180	Y
F040068	Metagenome / Metatranscriptome	162	N
F042865	Metagenome / Metatranscriptome	157	N
F043390	Metagenome / Metatranscriptome	156	N
F048174	Metagenome / Metatranscriptome	148	Y
F051119	Metagenome / Metatranscriptome	144	N
F054846	Metagenome / Metatranscriptome	139	N
F055725	Metagenome / Metatranscriptome	138	Y
F074867	Metagenome / Metatranscriptome	119	N
F075867	Metagenome / Metatranscriptome	118	N
F076005	Metagenome / Metatranscriptome	118	N
F087089	Metagenome / Metatranscriptome	110	N
F091607	Metagenome / Metatranscriptome	107	N
F101275	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103927_10109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas veronii	1784
Ga0103927_10295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas helleri	1265
Ga0103927_10378	Not Available	1161
Ga0103927_10590	Not Available	1007
Ga0103927_10702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	955
Ga0103927_10706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	954
Ga0103927_10950	Not Available	866
Ga0103927_11069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	829
Ga0103927_11213	Not Available	795
Ga0103927_11642	Not Available	719
Ga0103927_11756	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	703
Ga0103927_11818	Not Available	694
Ga0103927_11999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	671
Ga0103927_12017	Not Available	669
Ga0103927_12216	Not Available	649
Ga0103927_12475	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	627
Ga0103927_12957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Avibacterium → Avibacterium paragallinarum	590
Ga0103927_13078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes	582
Ga0103927_13158	Not Available	576
Ga0103927_13530	Not Available	553
Ga0103927_13731	Not Available	541
Ga0103927_14243	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103927_10109	Ga0103927_101092	F087089	LNNAKTIEFIENKANRELIKGIFGDTVLKKFDRVLVDAKRDRLGSTLGGVGGSQTYCRGATDKIMSQSIWKLDGAGASLGALLGTMLGGVGTMGGALGGAATAHAVKVLNMKQNALTSKAMLDPKYAAELLKKQIAPTQYKRGALESLKRNIAPSTIPAQDKN*
Ga0103927_10295	Ga0103927_102951	F055725	MAFFNGCGIDIKTITELAAEGLSLNSMSKVTGHSKDGIKAALDRNNIPYIMGIRERFITVDGVLTSLGDACHAQGFRRESLYAWRDKRRLNEQDGFDAHIIYQQSKRTIDKPILTFKNATVIYKKERYTLNEISDKLKLNRQRFEVFMRQNRYAQNAFERYCYMRG
Ga0103927_10378	Ga0103927_103782	F040068	MARSVPKCKRAAYVYDRDFIVVDDISGVLKMRSECAIDGYGFLSSQGDIRNPQETPPIIREQMAAWPDPRPIGQPVFTPSPDYQYFIFNYFVLSVQSGSTTFDATASVGFNAPIASMAWSVDGVYVVSGLVPVVTMTQGLHDISVLLTDLYGNVHVH*
Ga0103927_10590	Ga0103927_105902	F048174	MSDKGQLNNKDVQSHSNAVTGALNGEIARLKDDLDRLHRERDSFQRQCAVMAEENQQWEQDSKRLTWMIQNYGRVHFEFNANCYVTFIHKNEFKATLGSDDTRLEIDRAMEMCK*
Ga0103927_10702	Ga0103927_107021	F019998	GQKRFDIPTVTNGVPAAYACLETDFRQNSLSVAASAGASSITLTDTVEYIAGDYIGIASDSNGLMWYKVNSVVGQVVNLYEVGTTTAASLDYAASADAIVVGFTTLAWQPLRIIEARRVDLSSDIEVPLMIVGKFDYERIPNKAMTSIPLWLYAQTMIAETQVFVWPPTAYANWAIGYSFERRYQDVDSGINSMDFPPEAYESLRYGLAARLGDEFPIDPQRQAMLEQKAAGYFTAMRQASSGNASVKFGVRG*
Ga0103927_10706	Ga0103927_107063	F074867	MSNRGITDIMLNGEAFELHPTFSNLDKLETVLNKGAIGFLRQDLSSGAFKTGDVVSIIQVCAVPANSRKFPSWWTRDGVGEAVISAGLVGITTSVTHFLAKALTAGTETDIKTVGSESDEKK*
Ga0103927_10950	Ga0103927_109502	F042865	MSLRVPDYETFLAADDFNKRIWWQFMQSVVNDLPLNGNVAPENTVRANKSCLYVESTGGAAVLWFNPNGNGSATGWIVK*
Ga0103927_11069	Ga0103927_110692	F048174	AVLGEIERLKDDLDRLHRERDAFSRQCSVMAEENAMWEQDSKRLTWMIQNYGRVHFEFNANCYVTFIWKNEFKSTLGSDDARVEIDRAMEMCK*
Ga0103927_11213	Ga0103927_112132	F010914	MIYNILVEQNGKFVGSGETVECEFEETQAVIDELQ
Ga0103927_11642	Ga0103927_116422	F032247	MLVWSIIDRVSSVLGQVAAMSPREAINNLETYGRHLGNGFIAINHDRSCELLLKNAVIVLEDARMIQRDAKIGAIKIINRDMPKVDYTTGL*
Ga0103927_11756	Ga0103927_117561	F011139	MGLFLGLLAFLPLVYNLYNTFSKYVATIPMQNSILQTTTFIIFMLSLYCANSMLPCGRYYYEPEGGYVGNP*
Ga0103927_11818	Ga0103927_118182	F054846	INEKMPRRGAEGRGQRRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGFHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDPDFFSRDENGRDTPASRGIGRVTTNDFVL*
Ga0103927_11999	Ga0103927_119992	F051119	MTIKEAFEQFDALRVANALGLEYGVVCKWRDRESIPAYWRVKFVNLMNHHNVAIKLHDLAGWIK*
Ga0103927_12017	Ga0103927_120171	F101275	MILSGILGGLGGIPLITDVEPFKYEYRIGLETLVVRTLNQWVLHVGNLYLARTLTLKCLAWGVLLQRLNLNRLAGVCLNGGARGLIQPFT*
Ga0103927_12216	Ga0103927_122162	F075867	MNPALKPSTKHFLQYDAATFEHEGFKTLNGRISQLALEPRFWSVSVKVITESYDGLKKIKDHFNFKTSERCKLSDLRDQVKREVLDKDDYLPVCTQCLVTARVMM*
Ga0103927_12475	Ga0103927_124752	F043390	MIMSYQVKTEDLTKVISLTLTAEQLETIAGALEMYCIGLAEHNDPHLKYAADAQEAIIDVLESNFSVEA*
Ga0103927_12957	Ga0103927_129572	F011936	LEQLHETRLQKLEQGHDMLSRDYSRLNDAIVKISESLMALVVVQEQNKSIMQCMEHQSTTIEKLDARIDAIELQMPQLVESRQWLMIGLGLIVTAVIVALIALVIK*
Ga0103927_13078	Ga0103927_130782	F091607	MSLELQISELNATLKTLNENILLLLGSKEQYSKVECSPIEPVNLGQTEQQTFLPEVAKSDEYTREQLQSLCLEATKRNAANRDIIKAIMLSNFEARKTGDLADNQINLCYSMIAQATKDD
Ga0103927_13158	Ga0103927_131581	F076005	HWYSTRALFFNDEVIMKHFKVRVQYANGIDFLFECDAVTGWQAGALARVAGRLAVMGGSMDVKETIVQEV*
Ga0103927_13530	Ga0103927_135301	F019483	RQGYRRAGCVMANDTGTAEIDFGPFPGSNEASVAVTGQDAIGATSKAESWVMGDDSTTDHTASDHKYLPIFASFTCGNPVTATGFTIYGRSAHKLTGKYALRWVWSD*
Ga0103927_13731	Ga0103927_137312	F010914	MIYNILTEQNGKFVDSGETVDCEFEETQAVIDELQLEHGCC
Ga0103927_14243	Ga0103927_142432	F076005	LRLVLDKGFIFNDEVIMKHFKVRVQYLNGIDFLFECDAGRLAGMGGSMDVKETIVQEA*
Ga0103927_14388	Ga0103927_143881	F000007	ECIGKADKTVSLLQVSSRREDPPPEDQLAKEMTHDLEMNFNKIAPFGKEDTAKELQDHAAKTQDTLVDAVENAEVAEIKRAVFRALTRLRAATIKEFDTIARLETQAIDAYNDAHHYRAENPLSHLHEDEAPVETDKLKSFH*