Scaffold Ga0103938_10301

Overview

Basic Information

• Taxon OID: 3300008675
• Scaffold ID: Ga0103938_10301
• Source Dataset Name: Planktonic microbial communities from coastal waters of California, USA - Canon-44
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 913
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas helleri (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055725	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103938_103011	F055725	GGAG	MANFNGFGIDLKTITELAAQGLSLNSMSKMTGHSKNGIKAALERNNIPYTMGIRECFITVDGVLTSLGDACNAQGFSRESMYAWRVKRGLNEQDGFDAYIIYQHSKRTIDKPILTFNNATVIYKGKRYLLTEISDKLKLNKSHFEMFMRHNRYGQNAFERYCWMRGL*