3300008675: Planktonic microbial communities from coastal waters of California, USA - Canon-44

Overview

Basic Information

• IMG/M Taxon OID: 3300008675
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117987 | Gp0126527 | Ga0103938
• Sample Name: Planktonic microbial communities from coastal waters of California, USA - Canon-44
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1933771
• Sequencing Scaffolds: 10
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas helleri	1
Not Available	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Morganellaceae → Proteus → Proteus mirabilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Microbial Communities From Coastal Waters Of California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004956	Metagenome / Metatranscriptome	417	Y
F010914	Metagenome / Metatranscriptome	297	Y
F014835	Metagenome / Metatranscriptome	259	Y
F019998	Metagenome / Metatranscriptome	226	N
F025488	Metagenome / Metatranscriptome	201	N
F055725	Metagenome / Metatranscriptome	138	Y
F065844	Metagenome / Metatranscriptome	127	N
F075867	Metagenome / Metatranscriptome	118	N
F082613	Metagenome / Metatranscriptome	113	N
F090440	Metagenome / Metatranscriptome	108	N
F101016	Metagenome / Metatranscriptome	102	N
F105149	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103938_10301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas helleri	913
Ga0103938_10473	Not Available	795
Ga0103938_10502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	786
Ga0103938_10724	Not Available	701
Ga0103938_11187	Not Available	597
Ga0103938_11288	Not Available	577
Ga0103938_11651	Not Available	536
Ga0103938_11700	Not Available	531
Ga0103938_11716	Not Available	529
Ga0103938_11971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Morganellaceae → Proteus → Proteus mirabilis	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103938_10111	Ga0103938_101112	F101016	MADVEVMYNDAQKRQADQLLEELTALPAALPTSEELMNEQSIDSGEGEQGGLSPMVEQSSDQSDDGAIDQRVDESQQPNEPTQSVDIGEGALPIGQGAGIDGGAGLQEPTNGDMQEGV*
Ga0103938_10178	Ga0103938_101782	F025488	RGFIPQTSLAANLGFTRPMYIPAGNGTATALYDIVKVSTSGSTADTAGVPAGLMGCVRVSDKDDVPCGVIVGFIADPDYLNQTYRSASTARVALVNYDPQVVLEAQEDDNGTTLAFARIGTLLT*
Ga0103938_10301	Ga0103938_103011	F055725	MANFNGFGIDLKTITELAAQGLSLNSMSKMTGHSKNGIKAALERNNIPYTMGIRECFITVDGVLTSLGDACNAQGFSRESMYAWRVKRGLNEQDGFDAYIIYQHSKRTIDKPILTFNNATVIYKGKRYLLTEISDKLKLNKSHFEMFMRHNRYGQNAFERYCWMRGL*
Ga0103938_10473	Ga0103938_104731	F065844	YENVDYNFVGPDKKSWLYFIVKDDNIVKCGESGNPLLLETKGKNPRWKKGTFSRLGRYINGCTTDTVIREELYSAVKKGKVSVWAKQLPVTTVTVNVMGEEKIVERSIHKDLEMVYLDHFVTEYGNLPPLNKGRK*
Ga0103938_10502	Ga0103938_105022	F019998	VKYIAGDYIGIASDSNGLMWYKVNTVVGQVVNLYEVGTTTAASLDYAASVDGRVDLSSDIEVPLMIVGKFDYERIPNKAMTSIPLWLYAQTMIAETQVFVWPPTAYANWAIGYSFERRYQDVDNGINSMDFPPEAY
Ga0103938_10724	Ga0103938_107241	F075867	DAATFENEGFKTLNGRISQLALEPRFWSVSVKVITENFAATEKIKDHFNFKTSESCKLSDLREQVKKEVLDKDDYLPVCTQCLITARVMM*
Ga0103938_11187	Ga0103938_111871	F010914	MIYNILVEQAGIFVPTGETIECEFERTQEIIDALQLERGCCCALEAVGE*
Ga0103938_11288	Ga0103938_112881	F004956	MKLISPNGKNSIIAHPSKVESLKNMGWKEEAVQSKDKIKPSSKKKSKDEVENGNT*
Ga0103938_11651	Ga0103938_116512	F014835	MLVTTNREYKKTLAQQEDLNWDGDPDLDAEYECEEEKDLDELVVKWFYD*
Ga0103938_11700	Ga0103938_117002	F090440	TSLGGNEISGLKLATDLRLKRIYHCRITDVGEDYDLRIIIRKSIGG*
Ga0103938_11716	Ga0103938_117161	F082613	NGFPSELAWNITITSSANISGVNLTIVYLDAQLNQQSIVIAGPNATTKDAGIYATKIIWVTTSASASNILIGHTNVGFAPWKVIPSRGVSSTTGASIGIDGTANITLQTTFANIADNAIFAGTFDVFSHSYLAALTASAFDTVDTREIGVRLKFNSWSSGNVRLDLSVSAKG*
Ga0103938_11971	Ga0103938_119711	F105149	VRVGIKEELNAYVRNADLESFEADKCHQYHYLTDSFVRRFEFSSYENSYTMDLEDFTTACKLSQWGSTSEPRKSEFRDFLASITVVESRDITQATIGSIHFPAIHYFALFIGGCINAKDEACHMCVERPESPLLYRLIFDKRRVFRITLPAPAFFDSQTEGRYVITR