Scaffold Ga0103623_1001511

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103623_1001511

Scaffold Ga0103623_1001511

Overview

Basic Information
Taxon OID	3300008651 Open in IMG/M
Scaffold ID	Ga0103623_1001511 Open in IMG/M
Source Dataset Name	Microbial communities of saline water collected from the North Sea in Germany - HE327_13
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Goettingen Genomics Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1706
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → North Sea → Microbial Communities Of Saline Water Collected From The North Sea In Germany

Source Dataset Sampling Location
Location Name	North Sea, Germany
Coordinates	Lat. (^o)	54.4365	Long. (^o)	8.2328	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049593	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103623_10015113	F049593	AGGA	MDKELQQYYETLLDLFASQGWKQYVEDISDNMDLLQDITTIPDEKQFWFRRGQIEALQRVLSYESAIKNSYEDFEKEQYA*

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