Scaffold Ga0103933_10507

Overview

Basic Information

• Taxon OID: 3300008601
• Scaffold ID: Ga0103933_10507
• Source Dataset Name: Planktonic microbial communities from coastal waters of California, USA - Canon-36
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1102
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074867	Metagenome / Metatranscriptome	119	N
F078696	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103933_105073	F078696	AGG	MKLWSSAVSYLNIHPSEAWNLTPFEFWALWDTHLEKMEISTGKAYTRPMTMDEFNELSDFLDELHGDN*
Ga0103933_105074	F074867	GGAG	MSSRGITDIILNGEAFELHPTFSNLDKLETVLNKGAIGFLRQDPSSGAFKTGDVVSIIQVCAVPANGRKFPNWWNRDGVGEAVIGAGLVGITTSVTHFLAKALTAGTETDIKTVGSESDEKK*