Scaffold Ga0103934_10174

Overview

Basic Information

• Taxon OID: 3300008600
• Scaffold ID: Ga0103934_10174
• Source Dataset Name: Planktonic microbial communities from coastal waters of California, USA - Canon-38
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1186
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F003081	Metagenome / Metatranscriptome	508	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103934_101741	F000237	N/A	LILFIPSKITCLFCHES*DTDSGENTYEDKSGSYVS*FYDAFLKEIQDA*Y*TTFVFVYFFMHHFQGATVNYSLFER*NIAELDEIRFYAVAPH*YFRPMMGCLTISPSHYEGLS*FGL*LLLLAALPIINN*YNTSHTYLPVIPVQSSLLQTSGFIIFMFSMYTVASMLPCGRYYYEPEGGYVGNP*VKVSFQYLFLYLG*LVHNFDLIEHYAFNFIQTFTRQCTKLYDRANLKSKASLINYSQIENQKLTTSIRFENTNYNLKLFN*
Ga0103934_101742	F003081	AGG	MREEMFNDTRFGVEVFLMHLRGVDTLMLLSYMHILKKIYLKNYEPV*