3300008600: Planktonic microbial communities from coastal waters of California, USA - Canon-38

Overview

Basic Information

• IMG/M Taxon OID: 3300008600
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117987 | Gp0126523 | Ga0103934
• Sample Name: Planktonic microbial communities from coastal waters of California, USA - Canon-38
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2224230
• Sequencing Scaffolds: 7
• Novel Protein Genes: 9
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	2
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Microbial Communities From Coastal Waters Of California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F003081	Metagenome / Metatranscriptome	508	Y
F023489	Metagenome / Metatranscriptome	210	Y
F030108	Metagenome / Metatranscriptome	186	Y
F031121	Metagenome / Metatranscriptome	183	Y
F047996	Metagenome / Metatranscriptome	149	Y
F058437	Metagenome / Metatranscriptome	135	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103934_10174	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1186
Ga0103934_10392	Not Available	928
Ga0103934_10976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	674
Ga0103934_10986	Not Available	671
Ga0103934_11685	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	549
Ga0103934_11704	Not Available	547
Ga0103934_11972	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103934_10174	Ga0103934_101741	F000237	LILFIPSKITCLFCHES*DTDSGENTYEDKSGSYVS*FYDAFLKEIQDA*Y*TTFVFVYFFMHHFQGATVNYSLFER*NIAELDEIRFYAVAPH*YFRPMMGCLTISPSHYEGLS*FGL*LLLLAALPIINN*YNTSHTYLPVIPVQSSLLQTSGFIIFMFSMYTVASMLPCGRYYYEPEGGYVGNP*VKVSFQYLFLYLG*LVHNFDLIEHYAFNFIQTFTRQCTKLYDRANLKSKASLINYSQIENQKLTTSIRFENTNYNLKLFN*
Ga0103934_10174	Ga0103934_101742	F003081	MREEMFNDTRFGVEVFLMHLRGVDTLMLLSYMHILKKIYLKNYEPV*
Ga0103934_10212	Ga0103934_102121	F023489	NRCDCGANATKIVSATRHILDGASGDFPGSHMKWVREHENAGQTSKES*
Ga0103934_10392	Ga0103934_103922	F030108	MLNKITYDNVVKGLIAISLLFMAFGAKAADFSGSVGVSSDNYFRGVNISDGAGYSVKGLVDLDNGIFAGASVMSLDDRTDLMTKAVIGYGRDLGGVKVDVAYIDYGYQGLSLDGWEEVAVKAYFDKFAVQYSKGLDNAGDTYIVSSDALEIVDVAYGDSDLTGSWFEVSKSFDLGGGSLNVGD
Ga0103934_10976	Ga0103934_109761	F047996	MTDVQTEEKPTLVFEDNNYVIEDLSEKAQYLVGQLQDLAQQGNATRARLDQIEVARPGFTDMLRDELAAEPAEG
Ga0103934_10986	Ga0103934_109862	F058437	ASSGAADVAAREEAHAIIRALNQIEVTLDAALAAEALLDRKQRK*
Ga0103934_11685	Ga0103934_116851	F003081	MPEPGLVIELREEMFNDTRFGAEVFYMHVRGVDTIFVLSYLHILKKIYLKNYVTAESDG*
Ga0103934_11704	Ga0103934_117041	F031121	AVGVWGNNGGKGQLWNVVYLDKAKGPQVKGVSKDFGFHINRPFYLVSELPMNKVAEMLGGTNMVLKRWRKNQRQQQFFFDEVTKTVRNNYWKNYCLDI*
Ga0103934_11972	Ga0103934_119721	F003081	MPEPGLVVELREEMFNDTRFGAEVFYMHVRGVDTLMLLSYMHILKKIYLKNYVISESDG*