Scaffold Ga0103774_100497

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103774_100497

Scaffold Ga0103774_100497

Overview

Basic Information
Taxon OID	3300008587 Open in IMG/M
Scaffold ID	Ga0103774_100497 Open in IMG/M
Source Dataset Name	Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-AB-F-D
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Centre National de la Recherche Scientifique (CNRS)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1574
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Microbial Communities Of Cyanobacterial Mats From A Recreation Lake In Champs-sur-marne, France

Source Dataset Sampling Location
Location Name	Champs-sur-Marne, France
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042902	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103774_1004974	F042902	N/A	MTLKDLIDLAQDRDLAKSYPKADGLYIWDYKLVDGDKLELIVSDSGKTGFKDKVSVDELVNYILEETNPQLPADEIISQMKIVGAEGITIARI*

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